data_VPZ
# 
_chem_comp.id                                    VPZ 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-[3,5-bis(chloranyl)-4-fluoranyl-phenyl]sulfanyl-6-(hydroxymethyl)-4-[4-(1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]oxane-3,5-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H15 Cl2 F N4 O4 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-24 
_chem_comp.pdbx_modified_date                    2024-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        493.360 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VPZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OJP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VPZ C15 C1  C  0 1 Y N N N N N -29.397 23.798 -13.768 4.197  4.407  0.266  C15 VPZ 1  
VPZ C14 C2  C  0 1 Y N N N N N -41.215 24.697 -12.102 -2.099 -0.105 0.349  C14 VPZ 2  
VPZ C13 C3  C  0 1 Y N N N N N -42.375 24.684 -11.348 -2.962 0.649  1.122  C13 VPZ 3  
VPZ C12 C4  C  0 1 Y N N N N N -43.005 23.479 -10.966 -4.192 1.034  0.614  C12 VPZ 4  
VPZ C11 C5  C  0 1 Y N N N N N -42.482 22.336 -11.611 -4.560 0.665  -0.670 C11 VPZ 5  
VPZ C10 C6  C  0 1 Y N N N N N -41.357 22.302 -12.372 -3.700 -0.089 -1.446 C10 VPZ 6  
VPZ C8  C7  C  0 1 Y N N N N N -31.423 23.051 -14.428 3.592  2.309  -0.192 C8  VPZ 7  
VPZ C9  C8  C  0 1 Y N N N N N -40.774 23.526 -12.693 -2.464 -0.472 -0.941 C9  VPZ 8  
VPZ C6  C9  C  0 1 Y N N N N N -33.739 23.111 -13.474 2.860  -0.050 -0.813 C6  VPZ 9  
VPZ C5  C10 C  0 1 N N S N N N -36.302 22.638 -13.478 2.409  -2.514 -0.703 C5  VPZ 10 
VPZ N1  N1  N  0 1 Y N N N N N -33.371 22.093 -15.484 3.700  0.183  1.173  N1  VPZ 11 
VPZ C2  C11 C  0 1 N N R N N N -37.732 21.736 -11.650 0.774  -2.766 1.166  C2  VPZ 12 
VPZ C3  C12 C  0 1 N N N N N N -38.015 20.750 -10.527 1.217  -1.433 1.771  C3  VPZ 13 
VPZ O3  O1  O  0 1 N N N N N N -39.383 20.784 -10.013 0.162  -0.900 2.576  O3  VPZ 14 
VPZ C4  C13 C  0 1 N N R N N N -36.697 23.966 -12.993 1.223  -2.269 -1.640 C4  VPZ 15 
VPZ F   F1  F  0 1 N N N N N N -44.123 23.434 -10.195 -5.034 1.771  1.372  F   VPZ 16 
VPZ CL1 CL1 CL 0 0 N N N N N N -43.235 20.828 -11.130 -6.102 1.150  -1.303 CL1 VPZ 17 
VPZ CL  CL2 CL 0 0 N N N N N N -43.002 26.131 -10.560 -2.504 1.112  2.731  CL  VPZ 18 
VPZ S   S1  S  0 1 N N N N N N -39.373 23.590 -13.658 -1.366 -1.433 -1.929 S   VPZ 19 
VPZ C   C14 C  0 1 N N R N N N -38.088 23.965 -12.437 0.068  -1.660 -0.841 C   VPZ 20 
VPZ O2  O2  O  0 1 N N N N N N -36.662 24.906 -14.074 0.805  -3.509 -2.216 O2  VPZ 21 
VPZ C1  C15 C  0 1 N N R N N N -36.380 21.646 -12.313 1.958  -3.419 0.448  C1  VPZ 22 
VPZ O1  O3  O  0 1 N N N N N N -35.424 22.007 -11.301 3.037  -3.596 1.368  O1  VPZ 23 
VPZ O   O4  O  0 1 N N N N N N -38.140 23.046 -11.376 -0.282 -2.538 0.231  O   VPZ 24 
VPZ N   N2  N  0 1 Y N N N N N -34.900 22.668 -13.966 2.880  -1.235 -0.164 N   VPZ 25 
VPZ N2  N3  N  0 1 Y N N N N N -34.724 22.017 -15.175 3.384  -1.053 1.005  N2  VPZ 26 
VPZ C7  C16 C  0 1 Y N N N N N -32.856 22.787 -14.467 3.395  0.863  0.052  C7  VPZ 27 
VPZ S1  S2  S  0 1 Y N N N N N -30.399 22.375 -15.615 3.189  3.159  -1.681 S1  VPZ 28 
VPZ C16 C17 C  0 1 Y N N N N N -29.002 23.105 -14.908 3.767  4.665  -0.973 C16 VPZ 29 
VPZ N3  N4  N  0 1 Y N N N N N -30.767 23.766 -13.520 4.098  3.156  0.658  N3  VPZ 30 
VPZ H15 H1  H  0 1 N N N N N N -28.699 24.318 -13.128 4.605  5.177  0.904  H15 VPZ 31 
VPZ H14 H2  H  0 1 N N N N N N -40.658 25.614 -12.228 -1.141 -0.406 0.745  H14 VPZ 32 
VPZ H10 H3  H  0 1 N N N N N N -40.934 21.369 -12.713 -3.987 -0.376 -2.447 H10 VPZ 33 
VPZ H6  H4  H  0 1 N N N N N N -33.547 23.601 -12.531 2.498  0.137  -1.814 H6  VPZ 34 
VPZ H5  H5  H  0 1 N N N N N N -36.975 22.310 -14.284 3.215  -2.999 -1.253 H5  VPZ 35 
VPZ H2  H6  H  0 1 N N N N N N -38.418 21.405 -12.444 0.421  -3.426 1.959  H2  VPZ 36 
VPZ H31 H7  H  0 1 N N N N N N -37.816 19.736 -10.904 2.101  -1.590 2.389  H31 VPZ 37 
VPZ H32 H8  H  0 1 N N N N N N -37.331 20.973 -9.695  1.453  -0.731 0.971  H32 VPZ 38 
VPZ HO3 H9  H  0 1 N N N N N N -39.477 20.143 -9.319  0.374  -0.054 2.992  HO3 VPZ 39 
VPZ H4  H10 H  0 1 N N N N N N -36.000 24.284 -12.203 1.520  -1.581 -2.432 H4  VPZ 40 
VPZ H   H11 H  0 1 N N N N N N -38.321 24.975 -12.070 0.374  -0.696 -0.437 H   VPZ 41 
VPZ HO2 H12 H  0 1 N N N N N N -36.918 25.764 -13.757 0.056  -3.428 -2.822 HO2 VPZ 42 
VPZ H1  H13 H  0 1 N N N N N N -36.205 20.624 -12.680 1.654  -4.388 0.051  H1  VPZ 43 
VPZ HO1 H14 H  0 1 N N N N N N -35.476 21.389 -10.581 2.821  -4.159 2.123  HO1 VPZ 44 
VPZ H16 H15 H  0 1 N N N N N N -27.993 23.035 -15.287 3.773  5.631  -1.456 H16 VPZ 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VPZ S1  C16 SING Y N 1  
VPZ S1  C8  SING Y N 2  
VPZ N1  N2  DOUB Y N 3  
VPZ N1  C7  SING Y N 4  
VPZ N2  N   SING Y N 5  
VPZ C16 C15 DOUB Y N 6  
VPZ C7  C8  SING N N 7  
VPZ C7  C6  DOUB Y N 8  
VPZ C8  N3  DOUB Y N 9  
VPZ O2  C4  SING N N 10 
VPZ N   C5  SING N N 11 
VPZ N   C6  SING Y N 12 
VPZ C15 N3  SING Y N 13 
VPZ S   C9  SING N N 14 
VPZ S   C   SING N N 15 
VPZ C5  C4  SING N N 16 
VPZ C5  C1  SING N N 17 
VPZ C4  C   SING N N 18 
VPZ C9  C10 DOUB Y N 19 
VPZ C9  C14 SING Y N 20 
VPZ C   O   SING N N 21 
VPZ C10 C11 SING Y N 22 
VPZ C1  C2  SING N N 23 
VPZ C1  O1  SING N N 24 
VPZ C14 C13 DOUB Y N 25 
VPZ C2  O   SING N N 26 
VPZ C2  C3  SING N N 27 
VPZ C11 CL1 SING N N 28 
VPZ C11 C12 DOUB Y N 29 
VPZ C13 C12 SING Y N 30 
VPZ C13 CL  SING N N 31 
VPZ C12 F   SING N N 32 
VPZ C3  O3  SING N N 33 
VPZ C15 H15 SING N N 34 
VPZ C14 H14 SING N N 35 
VPZ C10 H10 SING N N 36 
VPZ C6  H6  SING N N 37 
VPZ C5  H5  SING N N 38 
VPZ C2  H2  SING N N 39 
VPZ C3  H31 SING N N 40 
VPZ C3  H32 SING N N 41 
VPZ O3  HO3 SING N N 42 
VPZ C4  H4  SING N N 43 
VPZ C   H   SING N N 44 
VPZ O2  HO2 SING N N 45 
VPZ C1  H1  SING N N 46 
VPZ O1  HO1 SING N N 47 
VPZ C16 H16 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VPZ InChI            InChI                1.06  "InChI=1S/C17H15Cl2FN4O4S2/c18-8-3-7(4-9(19)12(8)20)30-17-15(27)13(14(26)11(6-25)28-17)24-5-10(22-23-24)16-21-1-2-29-16/h1-5,11,13-15,17,25-27H,6H2/t11-,13+,14+,15-,17-/m1/s1" 
VPZ InChIKey         InChI                1.06  QJQNWNOQNZZJCB-YNIRGQLTSA-N                                                                                                                                                     
VPZ SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](Sc2cc(Cl)c(F)c(Cl)c2)[C@H](O)[C@H]([C@H]1O)n3cc(nn3)c4sccn4"                                                                                                    
VPZ SMILES           CACTVS               3.385 "OC[CH]1O[CH](Sc2cc(Cl)c(F)c(Cl)c2)[CH](O)[CH]([CH]1O)n3cc(nn3)c4sccn4"                                                                                                         
VPZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1csc(n1)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@@H]([C@@H]3O)Sc4cc(c(c(c4)Cl)F)Cl)CO)O"                                                                                                
VPZ SMILES           "OpenEye OEToolkits" 2.0.7 "c1csc(n1)c2cn(nn2)C3C(C(OC(C3O)Sc4cc(c(c(c4)Cl)F)Cl)CO)O"                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           VPZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-[3,5-bis(chloranyl)-4-fluoranyl-phenyl]sulfanyl-6-(hydroxymethyl)-4-[4-(1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]oxane-3,5-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VPZ "Create component" 2023-03-24 PDBE 
VPZ "Initial release"  2024-06-12 RCSB 
# 
