data_XGZ
# 
_chem_comp.id                                    XGZ 
_chem_comp.name                                  Mycothiol 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H30 N2 O12 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-[(N-acetyl-L-cysteinyl)amino]-2-deoxy-alpha-D-glucopyranoside " 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-16 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        486.491 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XGZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F5V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XGZ C02 C1  C 0 1 N N R -16.613 7.531  -2.253 3.253  -0.464 0.124  C02 XGZ 1  
XGZ C03 C2  C 0 1 N N R -15.560 6.780  -3.084 4.176  -1.596 0.579  C03 XGZ 2  
XGZ C05 C3  C 0 1 N N N -14.829 7.723  -4.042 3.984  -2.809 -0.334 C05 XGZ 3  
XGZ C07 C4  C 0 1 N N S -15.798 8.511  -4.940 2.530  -3.277 -0.262 C07 XGZ 4  
XGZ C09 C5  C 0 1 N N R -16.813 9.288  -4.074 1.606  -2.145 -0.717 C09 XGZ 5  
XGZ C11 C6  C 0 1 N N N -17.574 8.320  -3.150 1.798  -0.932 0.196  C11 XGZ 6  
XGZ C13 C7  C 0 1 N N R -19.752 9.207  -2.751 0.507  0.986  0.829  C13 XGZ 7  
XGZ C15 C8  C 0 1 N N R -20.631 7.389  -1.337 2.216  2.575  0.274  C15 XGZ 8  
XGZ C16 C9  C 0 1 N N N -21.492 6.151  -1.396 3.401  3.339  0.869  C16 XGZ 9  
XGZ C18 C10 C 0 1 N N S -21.234 8.418  -0.367 1.184  3.570  -0.263 C18 XGZ 10 
XGZ C20 C11 C 0 1 N N R -20.512 9.715  -0.465 -0.025 2.799  -0.802 C20 XGZ 11 
XGZ C22 C12 C 0 1 N N R -20.421 10.225 -1.849 -0.594 1.917  0.314  C22 XGZ 12 
XGZ C24 C13 C 0 1 N N N -20.121 12.584 -2.737 -2.660 0.664  0.624  C24 XGZ 13 
XGZ C25 C14 C 0 1 N N R -19.493 13.967 -2.750 -3.803 -0.156 0.085  C25 XGZ 14 
XGZ C27 C15 C 0 1 N N N -18.034 13.567 -4.888 -5.473 -1.626 1.080  C27 XGZ 15 
XGZ C28 C16 C 0 1 N N N -17.739 14.089 -6.309 -6.394 -2.007 2.209  C28 XGZ 16 
XGZ C30 C17 C 0 1 N N N -20.541 15.021 -2.261 -4.576 0.664  -0.950 C30 XGZ 17 
XGZ N23 N1  N 0 1 N N N -19.684 11.528 -1.818 -1.705 1.120  -0.210 N23 XGZ 18 
XGZ N26 N2  N 0 1 N N N -19.016 14.285 -4.100 -4.699 -0.527 1.183  N26 XGZ 19 
XGZ O01 O1  O 0 1 N N N -15.963 8.459  -1.434 3.570  -0.102 -1.221 O01 XGZ 20 
XGZ O04 O2  O 0 1 N N N -14.632 6.174  -2.213 5.535  -1.159 0.512  O04 XGZ 21 
XGZ O06 O3  O 0 1 N N N -13.977 6.928  -4.836 4.847  -3.866 0.090  O06 XGZ 22 
XGZ O08 O4  O 0 1 N N N -15.094 9.403  -5.776 2.351  -4.409 -1.115 O08 XGZ 23 
XGZ O10 O5  O 0 1 N N N -17.749 9.918  -4.933 0.248  -2.582 -0.649 O10 XGZ 24 
XGZ O12 O6  O 0 1 N N N -18.470 9.006  -2.257 0.935  0.125  -0.228 O12 XGZ 25 
XGZ O14 O7  O 0 1 N N N -20.530 7.954  -2.678 1.614  1.765  1.286  O14 XGZ 26 
XGZ O17 O8  O 0 1 N N N -20.881 5.192  -2.237 4.415  2.413  1.264  O17 XGZ 27 
XGZ O19 O9  O 0 1 N N N -21.074 7.940  0.977  1.767  4.341  -1.315 O19 XGZ 28 
XGZ O21 O10 O 0 1 N N N -21.219 10.702 0.359  -1.025 3.722  -1.238 O21 XGZ 29 
XGZ O29 O11 O 0 1 N N N -17.453 12.610 -4.487 -5.427 -2.308 0.078  O29 XGZ 30 
XGZ O32 O12 O 0 1 N N N -20.990 12.344 -3.483 -2.600 0.915  1.809  O32 XGZ 31 
XGZ S31 S1  S 0 1 N N N -22.379 14.903 -2.544 -5.952 -0.324 -1.599 S31 XGZ 32 
XGZ H1  H1  H 0 1 N N N -17.186 6.807  -1.656 3.389  0.400  0.775  H1  XGZ 33 
XGZ H2  H2  H 0 1 N N N -16.074 6.011  -3.680 3.934  -1.872 1.605  H2  XGZ 34 
XGZ H3  H3  H 0 1 N N N -14.240 8.439  -3.450 4.227  -2.532 -1.361 H3  XGZ 35 
XGZ H4  H4  H 0 1 N N N -16.357 7.789  -5.554 2.287  -3.553 0.764  H4  XGZ 36 
XGZ H5  H5  H 0 1 N N N -16.277 10.029 -3.463 1.849  -1.868 -1.743 H5  XGZ 37 
XGZ H6  H6  H 0 1 N N N -18.137 7.610  -3.773 1.556  -1.209 1.223  H6  XGZ 38 
XGZ H7  H7  H 0 1 N N N -19.733 9.583  -3.784 0.120  0.386  1.652  H7  XGZ 39 
XGZ H8  H8  H 0 1 N N N -19.630 7.111  -0.976 2.565  1.939  -0.540 H8  XGZ 40 
XGZ H9  H9  H 0 1 N N N -22.483 6.412  -1.797 3.804  4.022  0.122  H9  XGZ 41 
XGZ H10 H10 H 0 1 N N N -21.604 5.734  -0.384 3.068  3.906  1.738  H10 XGZ 42 
XGZ H11 H11 H 0 1 N N N -22.298 8.562  -0.605 0.865  4.233  0.541  H11 XGZ 43 
XGZ H12 H12 H 0 1 N N N -19.495 9.582  -0.069 0.285  2.174  -1.640 H12 XGZ 44 
XGZ H13 H13 H 0 1 N N N -21.438 10.407 -2.227 -0.950 2.546  1.130  H13 XGZ 45 
XGZ H14 H14 H 0 1 N N N -18.644 13.977 -2.050 -3.412 -1.059 -0.386 H14 XGZ 46 
XGZ H15 H15 H 0 1 N N N -16.976 13.453 -6.783 -6.935 -2.916 1.946  H15 XGZ 47 
XGZ H16 H16 H 0 1 N N N -18.661 14.063 -6.908 -5.810 -2.180 3.113  H16 XGZ 48 
XGZ H17 H17 H 0 1 N N N -17.369 15.123 -6.250 -7.106 -1.200 2.386  H17 XGZ 49 
XGZ H18 H18 H 0 1 N N N -20.414 15.078 -1.170 -4.967 1.566  -0.480 H18 XGZ 50 
XGZ H19 H19 H 0 1 N N N -20.234 15.974 -2.716 -3.909 0.939  -1.767 H19 XGZ 51 
XGZ H20 H20 H 0 1 N N N -18.919 11.673 -1.191 -1.753 0.919  -1.158 H20 XGZ 52 
XGZ H21 H21 H 0 1 N N N -19.417 15.095 -4.528 -4.736 0.019  1.984  H21 XGZ 53 
XGZ H22 H22 H 0 1 N N N -15.356 8.006  -0.861 4.479  0.205  -1.342 H22 XGZ 54 
XGZ H23 H23 H 0 1 N N N -15.089 5.589  -1.620 6.177  -1.827 0.786  H23 XGZ 55 
XGZ H24 H24 H 0 1 N N N -13.381 6.444  -4.276 4.778  -4.668 -0.445 H24 XGZ 56 
XGZ H25 H25 H 0 1 N N N -14.472 8.918  -6.305 2.906  -5.167 -0.885 H25 XGZ 57 
XGZ H26 H26 H 0 1 N N N -17.695 10.860 -4.824 0.053  -3.349 -1.205 H26 XGZ 58 
XGZ H27 H27 H 0 1 N N N -21.422 4.412  -2.275 5.198  2.828  1.650  H27 XGZ 59 
XGZ H28 H28 H 0 1 N N N -21.444 8.570  1.584  2.542  4.852  -1.046 H28 XGZ 60 
XGZ H29 H29 H 0 1 N N N -21.283 10.383 1.252  -0.730 4.318  -1.941 H29 XGZ 61 
XGZ H30 H30 H 0 1 N N N -22.811 15.985 -1.967 -6.532 0.509  -2.482 H30 XGZ 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XGZ C28 C27 SING N N 1  
XGZ O08 C07 SING N N 2  
XGZ C07 C09 SING N N 3  
XGZ C07 C05 SING N N 4  
XGZ O10 C09 SING N N 5  
XGZ C27 O29 DOUB N N 6  
XGZ C27 N26 SING N N 7  
XGZ O06 C05 SING N N 8  
XGZ N26 C25 SING N N 9  
XGZ C09 C11 SING N N 10 
XGZ C05 C03 SING N N 11 
XGZ O32 C24 DOUB N N 12 
XGZ C11 O12 SING N N 13 
XGZ C11 C02 SING N N 14 
XGZ C03 C02 SING N N 15 
XGZ C03 O04 SING N N 16 
XGZ C13 O14 SING N N 17 
XGZ C13 O12 SING N N 18 
XGZ C13 C22 SING N N 19 
XGZ C25 C24 SING N N 20 
XGZ C25 C30 SING N N 21 
XGZ C24 N23 SING N N 22 
XGZ O14 C15 SING N N 23 
XGZ S31 C30 SING N N 24 
XGZ C02 O01 SING N N 25 
XGZ O17 C16 SING N N 26 
XGZ C22 N23 SING N N 27 
XGZ C22 C20 SING N N 28 
XGZ C16 C15 SING N N 29 
XGZ C15 C18 SING N N 30 
XGZ C20 C18 SING N N 31 
XGZ C20 O21 SING N N 32 
XGZ C18 O19 SING N N 33 
XGZ C02 H1  SING N N 34 
XGZ C03 H2  SING N N 35 
XGZ C05 H3  SING N N 36 
XGZ C07 H4  SING N N 37 
XGZ C09 H5  SING N N 38 
XGZ C11 H6  SING N N 39 
XGZ C13 H7  SING N N 40 
XGZ C15 H8  SING N N 41 
XGZ C16 H9  SING N N 42 
XGZ C16 H10 SING N N 43 
XGZ C18 H11 SING N N 44 
XGZ C20 H12 SING N N 45 
XGZ C22 H13 SING N N 46 
XGZ C25 H14 SING N N 47 
XGZ C28 H15 SING N N 48 
XGZ C28 H16 SING N N 49 
XGZ C28 H17 SING N N 50 
XGZ C30 H18 SING N N 51 
XGZ C30 H19 SING N N 52 
XGZ N23 H20 SING N N 53 
XGZ N26 H21 SING N N 54 
XGZ O01 H22 SING N N 55 
XGZ O04 H23 SING N N 56 
XGZ O06 H24 SING N N 57 
XGZ O08 H25 SING N N 58 
XGZ O10 H26 SING N N 59 
XGZ O17 H27 SING N N 60 
XGZ O19 H28 SING N N 61 
XGZ O21 H29 SING N N 62 
XGZ S31 H30 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XGZ SMILES           ACDLabs              12.01 "CC(=O)NC(CS)C(=O)NC1C(O)C(O)C(CO)OC1OC1C(O)C(O)C(O)C(O)C1O"                                                                                                                                                              
XGZ InChI            InChI                1.06  "InChI=1S/C17H30N2O12S/c1-4(21)18-5(3-32)16(29)19-7-9(23)8(22)6(2-20)30-17(7)31-15-13(27)11(25)10(24)12(26)14(15)28/h5-15,17,20,22-28,32H,2-3H2,1H3,(H,18,21)(H,19,29)/t5-,6+,7+,8+,9+,10-,11-,12+,13+,14+,15-,17+/m0/s1" 
XGZ InChIKey         InChI                1.06  MQBCDKMPXVYCGO-FQBKTPCVSA-N                                                                                                                                                                                               
XGZ SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H](CS)C(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@@H]2[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]2O"                                                                                                       
XGZ SMILES           CACTVS               3.385 "CC(=O)N[CH](CS)C(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O)[CH](O)[CH](O)[CH](O)[CH]2O"                                                                                                                          
XGZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CS)C(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC2[C@@H]([C@H](C([C@H]([C@H]2O)O)O)O)O)CO)O)O"                                                                                                                 
XGZ SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CS)C(=O)NC1C(C(C(OC1OC2C(C(C(C(C2O)O)O)O)O)CO)O)O"                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XGZ "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-[(N-acetyl-L-cysteinyl)amino]-2-deoxy-alpha-D-glucopyranoside"                                                                                    
XGZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-acetamido-~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-2-[(2~{R},3~{R},5~{S},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-oxan-3-yl]-3-sulfanyl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XGZ "Create component" 2022-11-16 RCSB 
XGZ "Initial release"  2023-04-05 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XGZ 
_pdbx_chem_comp_synonyms.name         "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-[(N-acetyl-L-cysteinyl)amino]-2-deoxy-alpha-D-glucopyranoside " 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
